Inferring mRNA from Protein

AUTHOR

L. Grondin

http://rosalind.info/problems/mrna/

Sample input

MA

Sample output

12
use v6;



constant RNA-codon = Hash.new: <
UUU F      CUU L      AUU I      GUU V
UUC F      CUC L      AUC I      GUC V
UUA L      CUA L      AUA I      GUA V
UUG L      CUG L      AUG M      GUG V
UCU S      CCU P      ACU T      GCU A
UCC S      CCC P      ACC T      GCC A
UCA S      CCA P      ACA T      GCA A
UCG S      CCG P      ACG T      GCG A
UAU Y      CAU H      AAU N      GAU D
UAC Y      CAC H      AAC N      GAC D
UAA Stop   CAA Q      AAA K      GAA E
UAG Stop   CAG Q      AAG K      GAG E
UGU C      CGU R      AGU S      GGU G
UGC C      CGC R      AGC S      GGC G
UGA Stop   CGA R      AGA R      GGA G
UGG W      CGG R      AGG R      GGG G
>;

sub mrna($rna) {
    my %count;
    %count{.value}++ for RNA-codon;

    my $count = 1;
    for ($rna.comb, 'Stop').flat {
        $count *= %count{$_};
        $count %= 1_000_000;
    }
    return $count;
}

sub MAIN(Str $input = "MA") {
    say mrna $input;
}

# vim: expandtab shiftwidth=4 ft=perl6

See Also

afrq-grondilu.pl

Counting Disease Carriers

aspc-grondilu.pl

Introduction to Alternative Splicing

cons-grondilu.pl

Consensus and Profile

conv-grondilu.pl

Comparing Spectra with the Spectral Convolution

cstr-grondilu.pl

Creating a Character Table from Genetic Strings

ctbl-grondilu.pl

Creating a Character Table

dbpr-grondilu.pl

Introduction to Protein Databases

dna-gerdr.pl

Counting DNA Nucleotides

dna-grondilu.pl

Counting DNA Nucleotides

eubt-grondilu.pl

Enumerating Unrooted Binary Trees

eval-grondilu.pl

Expected Number of Restriction Sites

fib-grondilu.pl

Rabbits and Recurrence Relations

fibd-grondilu.pl

Mortal Fibonacci Rabbits

gc-gerdr.pl

Computing GC Content

grph-grondilu.pl

Overlap Graphs

hamm-grondilu.pl

Counting Point Mutations

iev-grondilu.pl

Calculating Expected Offspring

indc-grondilu.pl

Independent Segregation of Chromosomes

iprb-grondilu.pl

Mendel's First Law

itwv-grondilu.pl

Finding Disjoint Motifs in a Gene

lcsq-grondilu.pl

Finding a Shared Spliced Motif

lia-grondilu.pl

Independent Alleles

lrep-grondilu-p5.pl

mmch-grondilu.pl

Maximum Matchings and RNA Secondary Structures

mprt-grondilu.pl

Finding a Protein Motif

nwck-grondilu.pl

Distances in Trees

orf-grondilu.pl

Open Reading Frames

pmch-grondilu.pl

Perfect Matchings and RNA Secondary Structures

pper-grondilu.pl

Partial Permutations

prob-grondilu.pl

Introduction to Random Strings

qrt-grondilu.pl

Quartets

README.md

revc-gerdr.pl

Complementing a Strand of DNA

rna-gerdr.pl

Transcribing DNA into RNA

rstr-grondilu.pl

Matching Random Motifs

sexl-grondilu.pl

Sex-Linked Inheritance

sgra-grondilu.pl

Using the Spectrum Graph to Infer Peptides

spec-grondilu.pl

Inferring Protein from Spectrum

sseq-grondilu.pl

Finding a Spliced Motif

subs-grondilu.pl

Finding a Motif in DNA

suff-grondilu.pl

Encoding Suffix Trees

tran-grondilu.pl

Transitions and Transversions

trie-grondilu.pl

Introduction to Pattern Matching

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