Introduction to Random Strings

AUTHOR

L. Grondin

http://rosalind.info/problems/prob/

Sample input

ACGATACAA
    0.129 0.287 0.423 0.476 0.641 0.742 0.783

Sample output

-5.737 -5.217 -5.263 -5.360 -5.958 -6.628 -7.009
use v6;



my @sample = "ACGATACAA
0.129 0.287 0.423 0.476 0.641 0.742 0.783".split: "\n";

sub MAIN($input-file = Nil) {
    my ($dna, $gc-content-string) = $input-file ?? $input-file.IO.lines !! @sample;
    my @A = $gc-content-string.split(" ");
    my @B = map { log(prob :$dna, :gc-content($_))/log(10) }, @A;

    say "{@Bยป.fmt: "%.3f"}";
}

sub prob(:$dna, :$gc-content) {
    1/2**$dna.chars * [*] map {
        $_ eq 'G'|'C' ?? $gc-content !! (1 - $gc-content)
    }, $dna.comb;
}

# vim: expandtab shiftwidth=4 ft=perl6

See Also

afrq-grondilu.raku

Counting Disease Carriers

aspc-grondilu.raku

Introduction to Alternative Splicing

cons-grondilu.raku

Consensus and Profile

conv-grondilu.raku

Comparing Spectra with the Spectral Convolution

cstr-grondilu.raku

Creating a Character Table from Genetic Strings

ctbl-grondilu.raku

Creating a Character Table

dbpr-grondilu.raku

Introduction to Protein Databases

dna-gerdr.raku

Counting DNA Nucleotides

dna-grondilu.raku

Counting DNA Nucleotides

eubt-grondilu.raku

Enumerating Unrooted Binary Trees

eval-grondilu.raku

Expected Number of Restriction Sites

fib-grondilu.raku

Rabbits and Recurrence Relations

fibd-grondilu.raku

Mortal Fibonacci Rabbits

gc-gerdr.raku

Computing GC Content

grph-grondilu.raku

Overlap Graphs

hamm-grondilu.raku

Counting Point Mutations

iev-grondilu.raku

Calculating Expected Offspring

indc-grondilu.raku

Independent Segregation of Chromosomes

iprb-grondilu.raku

Mendel's First Law

itwv-grondilu.raku

Finding Disjoint Motifs in a Gene

lcsq-grondilu.raku

Finding a Shared Spliced Motif

lia-grondilu.raku

Independent Alleles

lrep-grondilu-p5.raku

mmch-grondilu.raku

Maximum Matchings and RNA Secondary Structures

mprt-grondilu.raku

Finding a Protein Motif

mrna-grondilu.raku

Inferring mRNA from Protein

nwck-grondilu.raku

Distances in Trees

orf-grondilu.raku

Open Reading Frames

pmch-grondilu.raku

Perfect Matchings and RNA Secondary Structures

pper-grondilu.raku

Partial Permutations

qrt-grondilu.raku

Quartets

README.md

revc-gerdr.raku

Complementing a Strand of DNA

rna-gerdr.raku

Transcribing DNA into RNA

rstr-grondilu.raku

Matching Random Motifs

sexl-grondilu.raku

Sex-Linked Inheritance

sgra-grondilu.raku

Using the Spectrum Graph to Infer Peptides

spec-grondilu.raku

Inferring Protein from Spectrum

sseq-grondilu.raku

Finding a Spliced Motif

subs-grondilu.raku

Finding a Motif in DNA

suff-grondilu.raku

Encoding Suffix Trees

tran-grondilu.raku

Transitions and Transversions

trie-grondilu.raku

Introduction to Pattern Matching

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